WormBase Tree Display for Variation: WBVar00145537
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| WBVar00145537 | Evidence | Paper_evidence | WBPaper00006305 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | gk130 | |||||
| HGVSg | CHROMOSOME_III:g.4017376_4017828del | ||||||
| Sequence_details | SMap | S_parent | Sequence | C36E8 | |||
| Flanking_sequences | cgagatcgaccaacacggcgcgtggcacat | ctgaaattaaatgattcacggcgaaaataa | |||||
| Mapping_target | C36E8 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | GK130_external | ||||||
| GK130_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00035552 | ||||||
| Laboratory | VC | ||||||
| Person | WBPerson427 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006537 | |||||
| Transcript | C36E8.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| cDNA_position | ?-180 | ||||||
| CDS_position | ?-175 | ||||||
| Protein_position | ?-59 | ||||||
| Intron_number | 2/5 | ||||||
| Exon_number | 1-3/6 | ||||||
| Description | Phenotype | WBPhenotype:0001224 | Paper_evidence | WBPaper00036056 | |||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | Mutants exhibited DD axon outgrowth defects | Paper_evidence | WBPaper00036056 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00036056 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Phenotype_not_observed | WBPhenotype:0000643 | Paper_evidence | WBPaper00036056 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Remark | gk130 mutants were not severely uncoordinated | Paper_evidence | WBPaper00036056 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Variation_effect | Probable_null_via_phenotype | Paper_evidence | WBPaper00036056 | ||||
| Curator_confirmed | WBPerson2021 | ||||||
| Reference | WBPaper00036056 | ||||||
| WBPaper00006305 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
