WormBase Tree Display for Variation: WBVar00145784
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| WBVar00145784 | Name | Public_name | gk378 | ||||
|---|---|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_V:g.8630888_8631553del | ||||||
| Sequence_details | SMap | S_parent | Sequence | F41E6 | |||
| Flanking_sequences | tcttgagttgcgaaatttgtacaaacactt | tacgcgtttgcaaccaccgcgcgcgttttt | |||||
| Mapping_target | F41E6 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | gk378_external | ||||||
| gk378_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00036154 | ||||||
| WBStrain00040747 | |||||||
| WBStrain00040748 | |||||||
| WBStrain00056628 | |||||||
| Laboratory | VC | ||||||
| DCD | |||||||
| Person | WBPerson427 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00018294 | |||||
| Transcript | F41E6.13b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| Intron_number | 2-4/8 | ||||||
| Exon_number | 1-4/9 | ||||||
| F41E6.13a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1-3/7 | ||||||
| Exon_number | 1-3/8 | ||||||
| Interactor | WBInteraction000051403 | ||||||
| WBInteraction000501086 | |||||||
| WBInteraction000501087 | |||||||
| WBInteraction000501088 | |||||||
| WBInteraction000505157 | |||||||
| WBInteraction000517938 | |||||||
| Isolation | Mutagen | TMP/UV | |||||
| Genetics | Mapping_data | In_multi_point | 5220 | ||||
| Description | Phenotype (12) | ||||||
| Phenotype_not_observed | WBPhenotype:0000050 | Paper_evidence | WBPaper00038332 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | Animals produced viable progeny. | Paper_evidence | WBPaper00038332 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| WBPhenotype:0000062 | Paper_evidence | WBPaper00038332 | |||||
| Curator_confirmed | WBPerson712 | ||||||
| Remark | Animals produced viable progeny. | Paper_evidence | WBPaper00038332 | ||||
| Curator_confirmed | WBPerson712 | ||||||
| Reference (11) | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
