WormBase Tree Display for Variation: WBVar00147680
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| WBVar00147680 | Name | Public_name | WBVar00147680 | ||
|---|---|---|---|---|---|
| Other_name | uCE1-559 | ||||
| haw930 | |||||
| haw112784 | |||||
| cewivar00160990 | |||||
| Y65B4A.2c.1:c.197-122T>A | |||||
| Y65B4A.2a.1:c.116-122T>A | |||||
| Y65B4A.2b.1:c.158-122T>A | |||||
| HGVSg | CHROMOSOME_I:g.647685T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y65B4A | |
| Flanking_sequences | atttattatttgaaaaatcaacgtt | attgatttttgtcatgatttatcga | |||
| Mapping_target | Y65B4A | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00532649 | |||
| WBVar01287818 | |||||
| WBVar00266767 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022026 | |||
| Transcript | Y65B4A.2b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2b.1:c.158-122T>A | ||||
| Intron_number | 3/8 | ||||
| Y65B4A.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2a.1:c.116-122T>A | ||||
| Intron_number | 2/7 | ||||
| Y65B4A.2c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y65B4A.2c.1:c.197-122T>A | ||||
| Intron_number | 3/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw930 | ||||
| Method | WGS_Hawaiian_Waterston |
