WormBase Tree Display for Variation: WBVar00148315
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WBVar00148315 | Name | Public_name | WBVar00148315 | ||
---|---|---|---|---|---|
Other_name | haw1565 | ||||
haw113330 | |||||
cewivar00161512 | |||||
Y48G8AL.10b.1:c.1981-42T>G | |||||
Y48G8AL.10c.1:c.1945-42T>G | |||||
Y48G8AL.10a.1:c.3070-42T>G | |||||
Y48G8AL.10d.1:c.1045-42T>G | |||||
HGVSg | CHROMOSOME_I:g.1140310A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y48G8AL | |
Flanking_sequences | tcatatctactagaatcgaattatt | tgggaacccaaaattccgagaaatg | |||
Mapping_target | Y48G8AL | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01299306 | |||
WBVar00533195 | |||||
Status | Live | ||||
Affects | Gene | WBGene00021689 | |||
Transcript | Y48G8AL.10d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.10d.1:c.1045-42T>G | ||||
Intron_number | 5/7 | ||||
Y48G8AL.10a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.10a.1:c.3070-42T>G | ||||
Intron_number | 11/14 | ||||
Y48G8AL.10c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.10c.1:c.1945-42T>G | ||||
Intron_number | 6/8 | ||||
Y48G8AL.10b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.10b.1:c.1981-42T>G | ||||
Intron_number | 7/9 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw1565 | ||||
Method | WGS_Hawaiian_Waterston |