WormBase Tree Display for Variation: WBVar00150862
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| WBVar00150862 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00150862 | |||
| Other_name | haw4112 | ||||
| cewivar00163321 | |||||
| Y23H5A.5d.2:c.522+241A>T | |||||
| Y23H5A.5d.1:c.522+241A>T | |||||
| Y23H5A.5c.1:c.522+241A>T | |||||
| Y23H5A.5d.3:c.522+241A>T | |||||
| Y23H5A.5a.1:c.564+241A>T | |||||
| HGVSg | CHROMOSOME_I:g.2609268A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y23H5A | |
| Flanking_sequences | aataattgccaaaaaattttttttt | atttgcggaaaaaattgtgaaaatt | |||
| Mapping_target | Y23H5A | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01340368 | |||
| WBVar01420177 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000832 | |||
| Transcript | Y23H5A.5d.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y23H5A.5d.3:c.522+241A>T | ||||
| Intron_number | 5/15 | ||||
| Y23H5A.5d.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y23H5A.5d.2:c.522+241A>T | ||||
| Intron_number | 5/14 | ||||
| Y23H5A.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y23H5A.5c.1:c.522+241A>T | ||||
| Intron_number | 5/10 | ||||
| Y23H5A.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y23H5A.5a.1:c.564+241A>T | ||||
| Intron_number | 4/15 | ||||
| Y23H5A.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y23H5A.5d.1:c.522+241A>T | ||||
| Intron_number | 5/15 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw4112 | ||||
| Method | WGS_Hawaiian_Waterston |
