WormBase Tree Display for Variation: WBVar00152166
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| WBVar00152166 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00152166 | |||
| Other_name | haw5416 | ||||
| cewivar00164760 | |||||
| Y44E3A.6a.1:c.1968+284A>T | |||||
| Y44E3A.6b.1:c.1968+284A>T | |||||
| Y44E3A.6a.2:c.1968+284A>T | |||||
| Y44E3A.6c.1:c.1974+284A>T | |||||
| Y44E3A.6d.1:c.1974+284A>T | |||||
| HGVSg | CHROMOSOME_I:g.3343050T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y44E3A | |
| Flanking_sequences | gaaatttgagatatatatttttttt | aaattatttttaaaaattcaaagtt | |||
| Mapping_target | Y44E3A | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01342403 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00021551 | |||
| Transcript | Y44E3A.6c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6c.1:c.1974+284A>T | ||||
| Intron_number | 10/13 | ||||
| Y44E3A.6a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6a.2:c.1968+284A>T | ||||
| Intron_number | 10/13 | ||||
| Y44E3A.6d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6d.1:c.1974+284A>T | ||||
| Intron_number | 9/12 | ||||
| Y44E3A.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6a.1:c.1968+284A>T | ||||
| Intron_number | 10/13 | ||||
| Y44E3A.6b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y44E3A.6b.1:c.1968+284A>T | ||||
| Intron_number | 10/13 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw5416 | ||||
| Method | WGS_Hawaiian_Waterston |
