WormBase Tree Display for Variation: WBVar00152420
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| WBVar00152420 | Name | Public_name | WBVar00152420 | ||
|---|---|---|---|---|---|
| Other_name | haw5670 | ||||
| haw116373 | |||||
| cewivar00073157 | |||||
| Y47G6A.23d.1:c.10681-226C>A | |||||
| Y47G6A.23b.1:c.10675-226C>A | |||||
| Y47G6A.23a.1:c.10669-226C>A | |||||
| Y47G6A.23c.1:c.10675-226C>A | |||||
| HGVSg | CHROMOSOME_I:g.3570609G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47G6A | |
| Flanking_sequences | tgatttttttgttttgaaaatggga | ttaaaaaaatgttttggctaaaaat | |||
| Mapping_target | Y47G6A | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00536238 | |||
| WBVar01342794 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003060 | |||
| Transcript | Y47G6A.23c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47G6A.23c.1:c.10675-226C>A | ||||
| Intron_number | 27/31 | ||||
| Y47G6A.23b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47G6A.23b.1:c.10675-226C>A | ||||
| Intron_number | 28/31 | ||||
| Y47G6A.23a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47G6A.23a.1:c.10669-226C>A | ||||
| Intron_number | 28/32 | ||||
| Y47G6A.23d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47G6A.23d.1:c.10681-226C>A | ||||
| Intron_number | 28/32 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw5670 | ||||
| Method | WGS_Hawaiian_Waterston |
