WormBase Tree Display for Variation: WBVar00153038
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| WBVar00153038 | Name | Public_name | WBVar00153038 | ||
|---|---|---|---|---|---|
| Other_name | haw6288 | ||||
| haw116793 | |||||
| cewivar00165439 | |||||
| C41D11.1c.1:c.942-1529C>T | |||||
| CE08663:p.Thr259= | |||||
| C41D11.1d.1:c.941+3279C>T | |||||
| C41D11.6.1:c.777G>A | |||||
| C41D11.1b.2:c.*182+1569C>T | |||||
| HGVSg | CHROMOSOME_I:g.4461928C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C41D11 | |
| Flanking_sequences | gcttcaattcggcatacttccttga | gtcacatcgtacgaccacttcgtaa | |||
| Mapping_target | C41D11 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01343664 | |||
| WBVar00536658 | |||||
| WBVar01282102 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016561 | |||
| WBGene00016565 | |||||
| Transcript | C41D11.1d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C41D11.1d.1:c.941+3279C>T | ||||
| Intron_number | 8/9 | ||||
| C41D11.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C41D11.1b.2:c.*182+1569C>T | ||||
| Intron_number | 9/9 | ||||
| C41D11.6.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C41D11.6.1:c.777G>A | ||||
| HGVSp | CE08663:p.Thr259= | ||||
| cDNA_position | 777 | ||||
| CDS_position | 777 | ||||
| Protein_position | 259 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| C41D11.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C41D11.1c.1:c.942-1529C>T | ||||
| Intron_number | 7/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw6288 | ||||
| Method | WGS_Hawaiian_Waterston |
