WormBase Tree Display for Variation: WBVar00154007
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| WBVar00154007 | Name | Public_name | WBVar00154007 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_I:g.6319839A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F26B1 | |
| Flanking_sequences | agatttctgaaacaaataccaaaga | ttctctcgcaactgtttcaaatctt | |||
| Mapping_target | F26B1 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01283214 | |||
| WBVar00537282 | |||||
| WBVar01344904 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017816 | |||
| Transcript | F26B1.2d.2 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2d.2:c.*1316A>G | ||||
| cDNA_position | 1603 | ||||
| Exon_number | 8/8 | ||||
| F26B1.2b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2b.1:c.*1002A>G | ||||
| cDNA_position | 1209 | ||||
| Exon_number | 8/8 | ||||
| F26B1.2c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2c.1:c.*107A>G | ||||
| cDNA_position | 1253 | ||||
| Exon_number | 9/9 | ||||
| F26B1.2d.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2d.1:c.*1307A>G | ||||
| cDNA_position | 1526 | ||||
| Exon_number | 7/7 | ||||
| F26B1.2b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2b.2:c.*1002A>G | ||||
| cDNA_position | 1275 | ||||
| Exon_number | 9/9 | ||||
| F26B1.2b.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2b.3:c.*1011A>G | ||||
| cDNA_position | 1284 | ||||
| Exon_number | 9/9 | ||||
| F26B1.2a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2a.1:c.*107A>G | ||||
| cDNA_position | 1317 | ||||
| Exon_number | 10/10 | ||||
| F26B1.2b.4 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F26B1.2b.4:c.*1011A>G | ||||
| cDNA_position | 1232 | ||||
| Exon_number | 8/8 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw7257 | ||||
| Method | WGS_Hawaiian_Waterston |
