WormBase Tree Display for Variation: WBVar00154054
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| WBVar00154054 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00154054 | |||
| Other_name | haw7304 | ||||
| cewivar00166627 | |||||
| C55B7.9b.1:c.*162T>C | |||||
| CE30437:p.Ser2Pro | |||||
| C55B7.8.1:c.4T>C | |||||
| C55B7.9a.3:c.*162T>C | |||||
| C55B7.9a.2:c.*162T>C | |||||
| HGVSg | CHROMOSOME_I:g.6492723A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | C55B7 | |
| Flanking_sequences | tgctcatctactggatttttcgatg | cattctaaattttcattggagtaaa | |||
| Mapping_target | C55B7 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01344963 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00007018 | |||
| WBGene00000937 | |||||
| Transcript | C55B7.9a.3 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C55B7.9a.3:c.*162T>C | ||||
| cDNA_position | 949 | ||||
| Exon_number | 10/10 | ||||
| C55B7.8.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | C55B7.8.1:c.4T>C | ||||
| HGVSp | CE30437:p.Ser2Pro | ||||
| cDNA_position | 5 | ||||
| CDS_position | 4 | ||||
| Protein_position | 2 | ||||
| Exon_number | 2/8 | ||||
| Codon_change | Tca/Cca | ||||
| Amino_acid_change | S/P | ||||
| C55B7.9b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C55B7.9b.1:c.*162T>C | ||||
| cDNA_position | 2325 | ||||
| Exon_number | 7/7 | ||||
| C55B7.9a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C55B7.9a.2:c.*162T>C | ||||
| cDNA_position | 1363 | ||||
| Exon_number | 9/9 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw7304 | ||||
| Method | WGS_Hawaiian_Waterston |
