WormBase Tree Display for Variation: WBVar00155019
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WBVar00155019 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00155019 | |||
Other_name | haw8269 | ||||
cewivar00167701 | |||||
F52B5.5a.1:c.1611G>A | |||||
F52B5.5b.3:c.270G>A | |||||
CE38369:p.Leu90= | |||||
F52B5.5b.1:c.270G>A | |||||
CE29805:p.Leu537= | |||||
F52B5.5b.4:c.270G>A | |||||
F52B5.5b.2:c.270G>A | |||||
HGVSg | CHROMOSOME_I:g.8328335G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F52B5 | |
Flanking_sequences | ttttgattcacaataaatttcagct | tcgactgctgagtatacaaaagtcg | |||
Mapping_target | F52B5 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01422031 | |||
WBVar01346131 | |||||
Status | Live | ||||
Affects | Gene | WBGene00000467 | |||
Transcript | F52B5.5b.1 | VEP_consequence | splice_region_variant,synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F52B5.5b.1:c.270G>A | ||||
HGVSp | CE38369:p.Leu90= | ||||
cDNA_position | 454 | ||||
CDS_position | 270 | ||||
Protein_position | 90 | ||||
Exon_number | 4/6 | ||||
Codon_change | ctG/ctA | ||||
Amino_acid_change | L | ||||
F52B5.5b.4 | VEP_consequence | splice_region_variant,synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F52B5.5b.4:c.270G>A | ||||
HGVSp | CE38369:p.Leu90= | ||||
cDNA_position | 2350 | ||||
CDS_position | 270 | ||||
Protein_position | 90 | ||||
Exon_number | 11/13 | ||||
Codon_change | ctG/ctA | ||||
Amino_acid_change | L | ||||
F52B5.5b.2 | VEP_consequence | splice_region_variant,synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F52B5.5b.2:c.270G>A | ||||
HGVSp | CE38369:p.Leu90= | ||||
cDNA_position | 1632 | ||||
CDS_position | 270 | ||||
Protein_position | 90 | ||||
Exon_number | 13/15 | ||||
Codon_change | ctG/ctA | ||||
Amino_acid_change | L | ||||
F52B5.5a.1 | VEP_consequence | splice_region_variant,synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F52B5.5a.1:c.1611G>A | ||||
HGVSp | CE29805:p.Leu537= | ||||
cDNA_position | 1617 | ||||
CDS_position | 1611 | ||||
Protein_position | 537 | ||||
Exon_number | 13/15 | ||||
Codon_change | ctG/ctA | ||||
Amino_acid_change | L | ||||
F52B5.5b.3 | VEP_consequence | splice_region_variant,synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F52B5.5b.3:c.270G>A | ||||
HGVSp | CE38369:p.Leu90= | ||||
cDNA_position | 2068 | ||||
CDS_position | 270 | ||||
Protein_position | 90 | ||||
Exon_number | 12/14 | ||||
Codon_change | ctG/ctA | ||||
Amino_acid_change | L | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw8269 | ||||
Method | WGS_Hawaiian_Waterston |