WormBase Tree Display for Variation: WBVar00155620
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WBVar00155620 | Name | Public_name | WBVar00155620 | ||
---|---|---|---|---|---|
Other_name | snp_F25H5[5] | ||||
haw8870 | |||||
cewivar00168411 | |||||
F25H5.1h.1:c.1389+1463T>G | |||||
F25H5.1c.1:c.792+1463T>G | |||||
F25H5.1f.1:c.1068+1463T>G | |||||
F25H5.1b.1:c.957+1463T>G | |||||
F25H5.1i.1:c.1479+1463T>G | |||||
F25H5.1e.1:c.558+1463T>G | |||||
HGVSg | CHROMOSOME_I:g.9190094A>C | ||||
Sequence_details | SMap | S_parent | Sequence | F25H5 | |
Flanking_sequences | tcaacagaagcttatcgaaaaaaaa | acacaaaaatcaaataaagtcatca | |||
Mapping_target | F25H5 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00244397 | |||
WBVar01346893 | |||||
Status | Live | ||||
Affects | Gene | WBGene00006407 | |||
Transcript | F25H5.1c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1c.1:c.792+1463T>G | ||||
Intron_number | 6/12 | ||||
F25H5.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1b.1:c.957+1463T>G | ||||
Intron_number | 7/13 | ||||
F25H5.1i.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1i.1:c.1479+1463T>G | ||||
Intron_number | 12/18 | ||||
F25H5.1e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1e.1:c.558+1463T>G | ||||
Intron_number | 5/11 | ||||
F25H5.1h.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1h.1:c.1389+1463T>G | ||||
Intron_number | 11/17 | ||||
F25H5.1f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F25H5.1f.1:c.1068+1463T>G | ||||
Intron_number | 9/15 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw8870 | ||||
Method | WGS_Hawaiian_Waterston |