WormBase Tree Display for Variation: WBVar00157605
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| WBVar00157605 | Name | Public_name | WBVar00157605 | ||
|---|---|---|---|---|---|
| Other_name | haw10855 | ||||
| haw119859 | |||||
| cewivar00170480 | |||||
| T22H2.5a.1:c.*242T>C | |||||
| T22H2.5c.1:c.*470T>C | |||||
| T22H2.5b.1:c.*99T>C | |||||
| T22H2.5a.2:c.*196T>C | |||||
| HGVSg | CHROMOSOME_I:g.11688867A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T22H2 | |
| Flanking_sequences | atatattggaagaatgcgttggaat | ataagaaaaacgtttttaaaaaagt | |||
| Mapping_target | T22H2 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00539724 | |||
| WBVar01349718 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00011935 | |||
| Transcript | T22H2.5a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22H2.5a.1:c.*242T>C | ||||
| cDNA_position | 1121 | ||||
| Exon_number | 8/8 | ||||
| T22H2.5b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22H2.5b.1:c.*99T>C | ||||
| cDNA_position | 996 | ||||
| Exon_number | 8/8 | ||||
| T22H2.5a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22H2.5a.2:c.*196T>C | ||||
| cDNA_position | 1075 | ||||
| Exon_number | 9/9 | ||||
| T22H2.5c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T22H2.5c.1:c.*470T>C | ||||
| cDNA_position | 1358 | ||||
| Exon_number | 7/7 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw10855 | ||||
| Method | WGS_Hawaiian_Waterston |
