WormBase Tree Display for Variation: WBVar00159289
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WBVar00159289 | Name | Public_name | WBVar00159289 | ||
---|---|---|---|---|---|
Other_name | uCE1-1335 | ||||
haw12539 | |||||
cewivar00172935 | |||||
CE53082:p.Thr71= | |||||
T07D10.2b.1:c.213A>C | |||||
CE13377:p.Thr63= | |||||
T07D10.2a.1:c.189A>C | |||||
HGVSg | CHROMOSOME_I:g.12621403A>C | ||||
Sequence_details | SMap | S_parent | Sequence | T07D10 | |
Flanking_sequences | ttctggtcacccttttcggtaacac | cttctgatctatgtgatctacaaga | |||
Mapping_target | T07D10 | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (19) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Swan | |||||
History | Acquires_merge | WBVar01288019 | |||
WBVar00267462 | |||||
WBVar01352351 | |||||
WBVar01426826 | |||||
Status | Live | ||||
Affects | Gene | WBGene00011582 | |||
Transcript | T07D10.2a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | T07D10.2a.1:c.189A>C | ||||
HGVSp | CE13377:p.Thr63= | ||||
cDNA_position | 189 | ||||
CDS_position | 189 | ||||
Protein_position | 63 | ||||
Exon_number | 2/6 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
T07D10.2b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | T07D10.2b.1:c.213A>C | ||||
HGVSp | CE53082:p.Thr71= | ||||
cDNA_position | 249 | ||||
CDS_position | 213 | ||||
Protein_position | 71 | ||||
Exon_number | 4/9 | ||||
Codon_change | acA/acC | ||||
Amino_acid_change | T | ||||
Reference | WBPaper00037807 | ||||
WBPaper00005369 | |||||
Remark | [20081124 db] this Variation was previously named hw12539 | ||||
Method | WGS_Hawaiian_Waterston |