WormBase Tree Display for Variation: WBVar00161340
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| WBVar00161340 | Name | Public_name | WBVar00161340 | ||
|---|---|---|---|---|---|
| Other_name | uCE1-1477 | ||||
| haw14590 | |||||
| haw122593 | |||||
| cewivar00003370 | |||||
| W09G3.1b.1:c.348+173T>G | |||||
| W09G3.1b.2:c.348+173T>G | |||||
| W09G3.5:n.1608A>C | |||||
| W09G3.1a.1:c.348+173T>G | |||||
| HGVSg | CHROMOSOME_I:g.13831566A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | W09G3 | |
| Flanking_sequences | aaatattcataaagtgaaaaatggc | aattccattttcagggttattttat | |||
| Mapping_target | W09G3 | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | SNP_Swan | |||
| WGS_De_Bono | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar01355276 | |||
| WBVar00267580 | |||||
| WBVar00542458 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012365 | |||
| WBGene00012368 | |||||
| Transcript | W09G3.1b.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09G3.1b.2:c.348+173T>G | ||||
| Intron_number | 3/7 | ||||
| W09G3.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09G3.1b.1:c.348+173T>G | ||||
| Intron_number | 3/6 | ||||
| W09G3.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09G3.1a.1:c.348+173T>G | ||||
| Intron_number | 3/7 | ||||
| Pseudogene | W09G3.5 | VEP_consequence | non_coding_transcript_exon_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | W09G3.5:n.1608A>C | ||||
| cDNA_position | 1608 | ||||
| Exon_number | 4/4 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw14590 | ||||
| Method | WGS_Hawaiian_Waterston |
