WormBase Tree Display for Variation: WBVar00162236
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| WBVar00162236 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00162236 | |||
| Other_name | haw15486 | ||||
| cewivar00175034 | |||||
| Y105E8A.25e.1:c.898-148T>G | |||||
| Y105E8A.25g.1:c.2527-148T>G | |||||
| Y105E8A.25c.1:c.1549-148T>G | |||||
| Y105E8A.25a.1:c.2824-148T>G | |||||
| Y105E8A.25b.1:c.3262-148T>G | |||||
| Y105E8A.25f.1:c.1327-148T>G | |||||
| Y105E8A.25d.1:c.982-148T>G | |||||
| HGVSg | CHROMOSOME_I:g.14576765A>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y105E8A | |
| Flanking_sequences | ttcttagcctcaaccatcaatttga | tggtagaggctagaaaattgttgta | |||
| Mapping_target | Y105E8A | ||||
| Type_of_mutation | Substitution | A | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01356602 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00013682 | |||
| Transcript | Y105E8A.25c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25c.1:c.1549-148T>G | ||||
| Intron_number | 9/14 | ||||
| Y105E8A.25f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25f.1:c.1327-148T>G | ||||
| Intron_number | 8/13 | ||||
| Y105E8A.25b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25b.1:c.3262-148T>G | ||||
| Intron_number | 17/24 | ||||
| Y105E8A.25d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25d.1:c.982-148T>G | ||||
| Intron_number | 4/9 | ||||
| Y105E8A.25e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25e.1:c.898-148T>G | ||||
| Intron_number | 3/8 | ||||
| Y105E8A.25a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25a.1:c.2824-148T>G | ||||
| Intron_number | 16/22 | ||||
| Y105E8A.25g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105E8A.25g.1:c.2527-148T>G | ||||
| Intron_number | 16/21 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw15486 | ||||
| Method | WGS_Hawaiian_Waterston |
