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WormBase Tree Display for Variation: WBVar00162251

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Name Class

WBVar00162251EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar00162251
Other_namehaw15501
cewivar00004739
Y105E8A.25a.1:c.1635-1516A>G
Y105E8A.25c.1:c.360-1516A>G
Y105E8A.25b.1:c.2072+543A>G
Y105E8A.25g.1:c.1338-1516A>G
Y105E8A.25f.1:c.138-1516A>G
HGVSgCHROMOSOME_I:g.14588655T>C
Sequence_detailsSMapS_parentSequenceY105E8A
Flanking_sequencestttttttgaaaaacgtgaataatttgaaaaaaaagtctttctgaaatagt
Mapping_targetY105E8A
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (13)
LaboratoryRW
AX
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01429125
WBVar01356616
StatusLive
AffectsGeneWBGene00013682
TranscriptY105E8A.25c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY105E8A.25c.1:c.360-1516A>G
Intron_number3/14
Y105E8A.25f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY105E8A.25f.1:c.138-1516A>G
Intron_number2/13
Y105E8A.25b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY105E8A.25b.1:c.2072+543A>G
Intron_number11/24
Y105E8A.25a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY105E8A.25a.1:c.1635-1516A>G
Intron_number10/22
Y105E8A.25g.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY105E8A.25g.1:c.1338-1516A>G
Intron_number10/21
ReferenceWBPaper00037807
Remark[20081124 db] this Variation was previously named hw15501
MethodWGS_Hawaiian_Waterston