WormBase Tree Display for Variation: WBVar00162419
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WBVar00162419 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00162419 | |||
Other_name | haw15669 | ||||
cewivar00175122 | |||||
Y54E5A.8a.1:c.73+114C>T | |||||
Y54E5A.6.1:c.-2+1270G>A | |||||
HGVSg | CHROMOSOME_I:g.14716949C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E5A | |
Flanking_sequences | aagaagcgaaatatttacgggattt | aaatttgcgatttttggttacaata | |||
Mapping_target | Y54E5A | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01356874 | |||
WBVar01429389 | |||||
Status | Live | ||||
Affects | Gene | WBGene00013203 | |||
WBGene00013201 | |||||
Transcript | Y54E5A.6.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E5A.6.1:c.-2+1270G>A | ||||
Intron_number | 1/8 | ||||
Y54E5A.8a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54E5A.8a.1:c.73+114C>T | ||||
Intron_number | 2/7 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw15669 | ||||
Method | WGS_Hawaiian_Waterston |