WormBase Tree Display for Variation: WBVar00162426
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| WBVar00162426 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00162426 | |||
| Other_name | haw15676 | ||||
| cewivar00175129 | |||||
| K05C4.11.1:c.666A>T | |||||
| K05C4.11.2:c.666A>T | |||||
| CE19979:p.Ala222= | |||||
| HGVSg | CHROMOSOME_I:g.14723048T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | K05C4 | |
| Flanking_sequences | tatatccatcgattattgttagtga | gctcgttcacattctgcaatagtgg | |||
| Mapping_target | K05C4 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01429405 | |||
| WBVar01356885 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00010587 | |||
| Transcript | K05C4.11.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K05C4.11.1:c.666A>T | ||||
| HGVSp | CE19979:p.Ala222= | ||||
| cDNA_position | 674 | ||||
| CDS_position | 666 | ||||
| Protein_position | 222 | ||||
| Exon_number | 5/8 | ||||
| Codon_change | gcA/gcT | ||||
| Amino_acid_change | A | ||||
| K05C4.11.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K05C4.11.2:c.666A>T | ||||
| HGVSp | CE19979:p.Ala222= | ||||
| cDNA_position | 736 | ||||
| CDS_position | 666 | ||||
| Protein_position | 222 | ||||
| Exon_number | 6/9 | ||||
| Codon_change | gcA/gcT | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw15676 | ||||
| Method | WGS_Hawaiian_Waterston |
