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WormBase Tree Display for Variation: WBVar00162679

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Name Class

WBVar00162679EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar00162679
Other_namehaw15929
cewivar00005257
ZK270.2a.1:c.278-226C>T
ZK270.2e.1:c.311-226C>T
ZK270.2d.1:c.278-226C>T
ZK270.3:n.54G>A
ZK270.2b.1:c.278-226C>T
HGVSgCHROMOSOME_I:g.14896616G>A
Sequence_detailsSMapS_parentSequenceZK270
Flanking_sequencesaaaaaatcagtaaacttttaaaaaaactcgatttcaaaattaaaattatc
Mapping_targetZK270
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (17)
LaboratoryRW
AX
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01231928
WBVar01357272
WBVar01290688
StatusLive
AffectsGeneWBGene00001488
WBGene00200345
TranscriptZK270.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK270.2b.1:c.278-226C>T
Intron_number3/12
ZK270.3VEP_consequencenon_coding_transcript_exon_variant
VEP_impactMODIFIER
HGVScZK270.3:n.54G>A
cDNA_position54
Exon_number1/1
ZK270.2d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK270.2d.1:c.278-226C>T
Intron_number2/14
ZK270.2e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK270.2e.1:c.311-226C>T
Intron_number4/13
ZK270.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScZK270.2a.1:c.278-226C>T
Intron_number3/13
ReferenceWBPaper00037807
Remark[20081124 db] this Variation was previously named hw15929
MethodWGS_Hawaiian_Waterston