WormBase Tree Display for Variation: WBVar00162679
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WBVar00162679 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00162679 | |||
Other_name | haw15929 | ||||
cewivar00005257 | |||||
ZK270.2a.1:c.278-226C>T | |||||
ZK270.2e.1:c.311-226C>T | |||||
ZK270.2d.1:c.278-226C>T | |||||
ZK270.3:n.54G>A | |||||
ZK270.2b.1:c.278-226C>T | |||||
HGVSg | CHROMOSOME_I:g.14896616G>A | ||||
Sequence_details | SMap | S_parent | Sequence | ZK270 | |
Flanking_sequences | aaaaaatcagtaaacttttaaaaaa | actcgatttcaaaattaaaattatc | |||
Mapping_target | ZK270 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (17) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01231928 | |||
WBVar01357272 | |||||
WBVar01290688 | |||||
Status | Live | ||||
Affects | Gene | WBGene00001488 | |||
WBGene00200345 | |||||
Transcript | ZK270.2b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | ZK270.2b.1:c.278-226C>T | ||||
Intron_number | 3/12 | ||||
ZK270.3 | VEP_consequence | non_coding_transcript_exon_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK270.3:n.54G>A | ||||
cDNA_position | 54 | ||||
Exon_number | 1/1 | ||||
ZK270.2d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK270.2d.1:c.278-226C>T | ||||
Intron_number | 2/14 | ||||
ZK270.2e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK270.2e.1:c.311-226C>T | ||||
Intron_number | 4/13 | ||||
ZK270.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK270.2a.1:c.278-226C>T | ||||
Intron_number | 3/13 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw15929 | ||||
Method | WGS_Hawaiian_Waterston |