WormBase Tree Display for Variation: WBVar00164450
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WBVar00164450 | Name | Public_name | WBVar00164450 | ||
---|---|---|---|---|---|
Other_name | haw17700 | ||||
haw124859 | |||||
cewivar00176766 | |||||
F53A10.2b.1:c.-786-1980T>C | |||||
F53A10.2a.1:c.313-1980T>C | |||||
F53A10.2b.3:c.-786-1980T>C | |||||
F53A10.2d.1:c.130-1980T>C | |||||
HGVSg | CHROMOSOME_II:g.1223788T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F53A10 | |
Flanking_sequences | tataagcctaagcataagacttatc | tgagcctaaactgtgtttaagctta | |||
Mapping_target | F53A10 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (11) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01359947 | |||
WBVar01294304 | |||||
WBVar00544724 | |||||
Status | Live | ||||
Affects | Gene | WBGene00018734 | |||
Transcript | F53A10.2d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2d.1:c.130-1980T>C | ||||
Intron_number | 2/9 | ||||
F53A10.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2b.1:c.-786-1980T>C | ||||
Intron_number | 3/12 | ||||
F53A10.2b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2b.3:c.-786-1980T>C | ||||
Intron_number | 2/11 | ||||
F53A10.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53A10.2a.1:c.313-1980T>C | ||||
Intron_number | 4/12 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw17700 | ||||
Method | WGS_Hawaiian_Waterston |