WormBase Tree Display for Variation: WBVar00170540
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WBVar00170540 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00170540 | |||
Other_name | haw23790 | ||||
cewivar00012133 | |||||
F53C3.13b.1:c.849-367A>T | |||||
F53C3.13f.1:c.855-367A>T | |||||
F53C3.13e.1:c.849-367A>T | |||||
F53C3.13d.2:c.849-367A>T | |||||
F53C3.13d.1:c.849-367A>T | |||||
F53C3.13a.1:c.849-367A>T | |||||
F53C3.13c.1:c.849-367A>T | |||||
HGVSg | CHROMOSOME_II:g.3924935T>A | ||||
Sequence_details | SMap | S_parent | Sequence | F53C3 | |
Flanking_sequences | tatataaaatattaatttttttttt | aattgtctgttttgaaaaaaatatt | |||
Mapping_target | F53C3 | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (29) | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01369679 | |||
Status | Live | ||||
Affects | Gene | WBGene00018756 | |||
Transcript | F53C3.13e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13e.1:c.849-367A>T | ||||
Intron_number | 4/6 | ||||
F53C3.13b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13b.1:c.849-367A>T | ||||
Intron_number | 4/6 | ||||
F53C3.13d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13d.1:c.849-367A>T | ||||
Intron_number | 4/7 | ||||
F53C3.13a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13a.1:c.849-367A>T | ||||
Intron_number | 4/6 | ||||
F53C3.13d.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13d.2:c.849-367A>T | ||||
Intron_number | 4/6 | ||||
F53C3.13f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13f.1:c.855-367A>T | ||||
Intron_number | 4/6 | ||||
F53C3.13c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F53C3.13c.1:c.849-367A>T | ||||
Intron_number | 4/6 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw23790 | ||||
Method | WGS_Hawaiian_Waterston |