WormBase Tree Display for Variation: WBVar00170610
expand all nodes | collapse all nodes | view schema
| WBVar00170610 | Name | Public_name | WBVar00170610 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_II:g.3951274A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | T20H12 | |
| Flanking_sequences | tttatttcagcactggaatcgcggc | aagctgaacccactgaattgtcgac | |||
| Mapping_target | T20H12 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00549488 | |||
| WBVar01304574 | |||||
| WBVar01369785 | |||||
| WBVar01238261 | |||||
| WBVar00221520 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004751 | |||
| Transcript | K10G6.3i.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | K10G6.3i.1:c.36A>G | ||||
| HGVSp | CE50351:p.Ala12= | ||||
| cDNA_position | 36 | ||||
| CDS_position | 36 | ||||
| Protein_position | 12 | ||||
| Exon_number | 2/14 | ||||
| Codon_change | gcA/gcG | ||||
| Amino_acid_change | A | ||||
| K10G6.3f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K10G6.3f.1:c.36A>G | ||||
| HGVSp | CE50430:p.Ala12= | ||||
| cDNA_position | 36 | ||||
| CDS_position | 36 | ||||
| Protein_position | 12 | ||||
| Exon_number | 2/15 | ||||
| Codon_change | gcA/gcG | ||||
| Amino_acid_change | A | ||||
| K10G6.3g.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K10G6.3g.1:c.36A>G | ||||
| HGVSp | CE50510:p.Ala12= | ||||
| cDNA_position | 36 | ||||
| CDS_position | 36 | ||||
| Protein_position | 12 | ||||
| Exon_number | 2/15 | ||||
| Codon_change | gcA/gcG | ||||
| Amino_acid_change | A | ||||
| K10G6.3h.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | K10G6.3h.1:c.36A>G | ||||
| HGVSp | CE50366:p.Ala12= | ||||
| cDNA_position | 36 | ||||
| CDS_position | 36 | ||||
| Protein_position | 12 | ||||
| Exon_number | 2/10 | ||||
| Codon_change | gcA/gcG | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw23860 | ||||
| Method | WGS_Hawaiian_Waterston |
