WormBase Tree Display for Variation: WBVar00171440
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| WBVar00171440 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00171440 | |||
| Other_name | haw24690 | ||||
| cewivar00184234 | |||||
| T12C9.7c.1:c.162G>A | |||||
| CE41931:p.Thr54= | |||||
| CE41930:p.Thr54= | |||||
| CE41932:p.Thr54= | |||||
| T12C9.7b.1:c.162G>A | |||||
| T12C9.7a.1:c.162G>A | |||||
| HGVSg | CHROMOSOME_II:g.4460145C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T12C9 | |
| Flanking_sequences | agagtctaaccaattgccgcttttt | gtgcactgctttttctcatccggtg | |||
| Mapping_target | T12C9 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01370990 | |||
| WBVar01305601 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00020461 | |||
| Transcript | T12C9.7c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | T12C9.7c.1:c.162G>A | ||||
| HGVSp | CE41932:p.Thr54= | ||||
| cDNA_position | 200 | ||||
| CDS_position | 162 | ||||
| Protein_position | 54 | ||||
| Exon_number | 3/8 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| T12C9.7a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T12C9.7a.1:c.162G>A | ||||
| HGVSp | CE41930:p.Thr54= | ||||
| cDNA_position | 762 | ||||
| CDS_position | 162 | ||||
| Protein_position | 54 | ||||
| Exon_number | 3/11 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| T12C9.7b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | T12C9.7b.1:c.162G>A | ||||
| HGVSp | CE41931:p.Thr54= | ||||
| cDNA_position | 215 | ||||
| CDS_position | 162 | ||||
| Protein_position | 54 | ||||
| Exon_number | 3/11 | ||||
| Codon_change | acG/acA | ||||
| Amino_acid_change | T | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw24690 | ||||
| Method | WGS_Hawaiian_Waterston |
