WormBase Tree Display for Variation: WBVar00171903
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| WBVar00171903 | Name | Public_name | WBVar00171903 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_II:g.5180427A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | C27D6 | |
| Flanking_sequences | agagttcgtcgctcttctgctgaca | caccaagtctccattggcagttata | |||
| Mapping_target | C27D6 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00550423 | |||
| WBVar01371590 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00016162 | |||
| Transcript | C27D6.4c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | C27D6.4c.1:c.760T>C | ||||
| HGVSp | CE48424:p.Leu254= | ||||
| cDNA_position | 950 | ||||
| CDS_position | 760 | ||||
| Protein_position | 254 | ||||
| Exon_number | 7/10 | ||||
| Codon_change | Ttg/Ctg | ||||
| Amino_acid_change | L | ||||
| C27D6.4a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C27D6.4a.1:c.379T>C | ||||
| HGVSp | CE32146:p.Leu127= | ||||
| cDNA_position | 396 | ||||
| CDS_position | 379 | ||||
| Protein_position | 127 | ||||
| Exon_number | 4/7 | ||||
| Codon_change | Ttg/Ctg | ||||
| Amino_acid_change | L | ||||
| C27D6.4b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C27D6.4b.1:c.694T>C | ||||
| HGVSp | CE32147:p.Leu232= | ||||
| cDNA_position | 710 | ||||
| CDS_position | 694 | ||||
| Protein_position | 232 | ||||
| Exon_number | 8/11 | ||||
| Codon_change | Ttg/Ctg | ||||
| Amino_acid_change | L | ||||
| C27D6.4d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | C27D6.4d.1:c.364T>C | ||||
| HGVSp | CE48416:p.Leu122= | ||||
| cDNA_position | 364 | ||||
| CDS_position | 364 | ||||
| Protein_position | 122 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | Ttg/Ctg | ||||
| Amino_acid_change | L | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw25153 | ||||
| Method | WGS_Hawaiian_Waterston |
