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WormBase Tree Display for Variation: WBVar00171951

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Name Class

WBVar00171951EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar00171951
Other_namepas35448
haw25201
cewivar00090247
C34F11.9a.1:c.219+116T>A
C34F11.9a.2:c.219+116T>A
C34F11.9c.1:c.219+116T>A
C34F11.9b.2:c.-500+116T>A
HGVSgCHROMOSOME_II:g.5224982A>T
Sequence_detailsSMapS_parentSequenceC34F11
Flanking_sequencestttgagtaagtttaaataaacttttaaaagttttactttgttttattttt
Mapping_targetC34F11
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (15)
LaboratoryRW
AX
PersonWBPerson1562
WBPerson6900
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
WGS_Pasadena_Quinlan
HistoryAcquires_mergeWBVar01371659
WBVar01239977
WBVar00223672
StatusLive
AffectsGeneWBGene00001101
TranscriptC34F11.9a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC34F11.9a.1:c.219+116T>A
Intron_number3/13
C34F11.9b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC34F11.9b.2:c.-500+116T>A
Intron_number2/14
C34F11.9a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC34F11.9a.2:c.219+116T>A
Intron_number3/14
C34F11.9c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC34F11.9c.1:c.219+116T>A
Intron_number3/15
ReferenceWBPaper00037807
Remark[20081124 db] this Variation was previously named hw25201
MethodWGS_Hawaiian_Waterston