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WormBase Tree Display for Variation: WBVar00172341

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Name Class

WBVar00172341NamePublic_nameWBVar00172341
Other_namehaw25591
haw130846
cewivar00184749
F55C12.1a.3:c.-10+327A>G
F55C12.1c.1:c.42+327A>G
F55C12.1b.1:c.42+327A>G
F55C12.1d.1:c.33+2160A>G
F55C12.1a.1:c.-10+2160A>G
HGVSgCHROMOSOME_II:g.5886823A>G
Sequence_detailsSMapS_parentSequenceF55C12
Flanking_sequencesaaattattcagctttcacaataaataggacagtttattttatttatgctt
Mapping_targetF55C12
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01372159
WBVar00550711
StatusLive
AffectsGeneWBGene00018869
TranscriptF55C12.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF55C12.1b.1:c.42+327A>G
Intron_number2/5
F55C12.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF55C12.1c.1:c.42+327A>G
Intron_number2/4
F55C12.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF55C12.1d.1:c.33+2160A>G
Intron_number1/4
F55C12.1a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF55C12.1a.3:c.-10+327A>G
Intron_number1/5
F55C12.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF55C12.1a.1:c.-10+2160A>G
Intron_number1/5
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw25591
MethodWGS_Hawaiian_Waterston