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WormBase Tree Display for Variation: WBVar00172478

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Name Class

WBVar00172478NamePublic_nameWBVar00172478
Other_namehaw25728
haw130943
cewivar00184886
C29H12.3b.1:c.-121-830G>C
C29H12.3a.1:c.99-830G>C
C29H12.3b.2:c.-951G>C
C29H12.3a.2:c.99-830G>C
HGVSgCHROMOSOME_II:g.6105227G>C
Sequence_detailsSMapS_parentSequenceC29H12
Flanking_sequencesttctatgagggtgtaaatataatttctatctatacctctgaacctagaga
Mapping_targetC29H12
Type_of_mutationSubstitutionGC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00550808
WBVar01372336
StatusLive
AffectsGeneWBGene00004346
TranscriptC29H12.3b.2VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScC29H12.3b.2:c.-951G>C
cDNA_position54
Exon_number1/6
C29H12.3a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3a.2:c.99-830G>C
Intron_number2/6
C29H12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3a.1:c.99-830G>C
Intron_number3/7
C29H12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3b.1:c.-121-830G>C
Intron_number1/6
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw25728
MethodWGS_Hawaiian_Waterston