WormBase Tree Display for Variation: WBVar00172478
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WBVar00172478 | Name | Public_name | WBVar00172478 | ||
---|---|---|---|---|---|
Other_name | haw25728 | ||||
haw130943 | |||||
cewivar00184886 | |||||
C29H12.3b.1:c.-121-830G>C | |||||
C29H12.3a.1:c.99-830G>C | |||||
C29H12.3b.2:c.-951G>C | |||||
C29H12.3a.2:c.99-830G>C | |||||
HGVSg | CHROMOSOME_II:g.6105227G>C | ||||
Sequence_details | SMap | S_parent | Sequence | C29H12 | |
Flanking_sequences | ttctatgagggtgtaaatataattt | ctatctatacctctgaacctagaga | |||
Mapping_target | C29H12 | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00550808 | |||
WBVar01372336 | |||||
Status | Live | ||||
Affects | Gene | WBGene00004346 | |||
Transcript | C29H12.3b.2 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3b.2:c.-951G>C | ||||
cDNA_position | 54 | ||||
Exon_number | 1/6 | ||||
C29H12.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3a.2:c.99-830G>C | ||||
Intron_number | 2/6 | ||||
C29H12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3a.1:c.99-830G>C | ||||
Intron_number | 3/7 | ||||
C29H12.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3b.1:c.-121-830G>C | ||||
Intron_number | 1/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw25728 | ||||
Method | WGS_Hawaiian_Waterston |