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WormBase Tree Display for Variation: WBVar00172479

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Name Class

WBVar00172479NamePublic_nameWBVar00172479
Other_namehaw25729
haw130945
cewivar00184888
C29H12.3b.2:c.9+125C>T
C29H12.3a.2:c.228+125C>T
C29H12.3b.1:c.9+125C>T
C29H12.3a.1:c.228+125C>T
HGVSgCHROMOSOME_II:g.6106311C>T
Sequence_detailsSMapS_parentSequenceC29H12
Flanking_sequencestctcatgccatgagtcggcaaatgtaaagtctccctgattacacacactc
Mapping_targetC29H12
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00006625From_analysisMillion_mutation_project_reanalysis
WBStrain00023192From_analysisMillion_mutation_project_reanalysis
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01372338
WBVar00550810
StatusLive
AffectsGeneWBGene00004346
TranscriptC29H12.3b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3b.2:c.9+125C>T
Intron_number2/5
C29H12.3a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3a.2:c.228+125C>T
Intron_number3/6
C29H12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3a.1:c.228+125C>T
Intron_number4/7
C29H12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC29H12.3b.1:c.9+125C>T
Intron_number3/6
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw25729
MethodWGS_Hawaiian_Waterston