WormBase Tree Display for Variation: WBVar00172479
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WBVar00172479 | Name | Public_name | WBVar00172479 | ||
---|---|---|---|---|---|
Other_name | haw25729 | ||||
haw130945 | |||||
cewivar00184888 | |||||
C29H12.3b.2:c.9+125C>T | |||||
C29H12.3a.2:c.228+125C>T | |||||
C29H12.3b.1:c.9+125C>T | |||||
C29H12.3a.1:c.228+125C>T | |||||
HGVSg | CHROMOSOME_II:g.6106311C>T | ||||
Sequence_details | SMap | S_parent | Sequence | C29H12 | |
Flanking_sequences | tctcatgccatgagtcggcaaatgt | aaagtctccctgattacacacactc | |||
Mapping_target | C29H12 | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01372338 | |||
WBVar00550810 | |||||
Status | Live | ||||
Affects | Gene | WBGene00004346 | |||
Transcript | C29H12.3b.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3b.2:c.9+125C>T | ||||
Intron_number | 2/5 | ||||
C29H12.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3a.2:c.228+125C>T | ||||
Intron_number | 3/6 | ||||
C29H12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3a.1:c.228+125C>T | ||||
Intron_number | 4/7 | ||||
C29H12.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C29H12.3b.1:c.9+125C>T | ||||
Intron_number | 3/6 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw25729 | ||||
Method | WGS_Hawaiian_Waterston |