WormBase Tree Display for Variation: WBVar00174886
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| WBVar00174886 | Name | Public_name | WBVar00174886 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_II:g.9996782T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK892 | |
| Flanking_sequences | tagtagacatttgccctattctaac | tggtgcacaacacaaaaactttcac | |||
| Mapping_target | ZK892 | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01375409 | |||
| WBVar00552377 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00305956 | |||
| WBGene00002266 | |||||
| Transcript | ZK892.1d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1d.1:c.342+1031T>G | ||||
| Intron_number | 5/12 | ||||
| ZK892.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1c.1:c.342+1031T>G | ||||
| Intron_number | 5/12 | ||||
| ZK892.11 | |||||
| ZK892.1a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1a.2:c.330+1031T>G | ||||
| Intron_number | 6/12 | ||||
| ZK892.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1f.1:c.450+1031T>G | ||||
| Intron_number | 5/10 | ||||
| ZK892.1a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1a.1:c.330+1031T>G | ||||
| Intron_number | 5/11 | ||||
| ZK892.1b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1b.2:c.330+1031T>G | ||||
| Intron_number | 6/11 | ||||
| ZK892.1c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1c.2:c.342+1031T>G | ||||
| Intron_number | 5/10 | ||||
| ZK892.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK892.1b.1:c.330+1031T>G | ||||
| Intron_number | 5/10 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw28136 | ||||
| Method | WGS_Hawaiian_Waterston |
