WormBase Tree Display for Variation: WBVar00175373

WBVar00175373 Name: Public_name: WBVar00175373
    Other_name: haw28623
      haw132844
      cewivar00121447
      C52A11.4c.1:c.2236-97C>A
      C52A11.4a.1:c.2809-97C>A
      C52A11.4f.1:c.2809-97C>A
      C52A11.4e.1:c.2182-97C>A
      C52A11.4g.1:c.2182-97C>A
      C52A11.4d.1:c.2896-97C>A
    HGVSg: CHROMOSOME_II:g.10754182G>T
  Sequence_details: SMap: S_parent: Sequence: C52A11
    Flanking_sequences: tggccaactttcttagtttcttgct ttttaaaaatttccgcccgacactg
    Mapping_target: C52A11
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004599 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004602 From_analysis: WGS_De_Bono
          WGS_Hawaiian_Waterston
          WGS_Yanai
          Million_mutation_project_reanalysis
      WBStrain00006629 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006631 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006640 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022878 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023138 From_analysis: Million_mutation_project_reanalysis
      WBStrain00024204 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027647 From_analysis: Million_mutation_project_reanalysis
    Laboratory: RW
      AX
    Person: WBPerson1562
      WBPerson4037
    Analysis: WGS_Hawaiian_Waterston
      WGS_De_Bono
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01376077
        WBVar00552709
    Status: Live
  Affects: Gene: WBGene00003404
    Transcript: C52A11.4c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4c.1:c.2236-97C>A
        Intron_number: 15/35
      C52A11.4f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4f.1:c.2809-97C>A
        Intron_number: 21/42
      C52A11.4g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4g.1:c.2182-97C>A
        Intron_number: 20/40
      C52A11.4e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4e.1:c.2182-97C>A
        Intron_number: 15/35
      C52A11.4d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4d.1:c.2896-97C>A
        Intron_number: 22/42
      C52A11.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: C52A11.4a.1:c.2809-97C>A
        Intron_number: 22/43
  Reference: WBPaper00038208
    WBPaper00037807
  Remark: [20081124 db] this Variation was previously named hw28623
  Method: WGS_Hawaiian_Waterston