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WormBase Tree Display for Variation: WBVar00175952

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Name Class

WBVar00175952NamePublic_nameWBVar00175952
Other_namehaw29202
haw133284
cewivar00121897
F54D5.12.2:c.-2-675A>T
F54D5.11.1:c.553-164A>T
HGVSgCHROMOSOME_II:g.11541307T>A
Sequence_detailsSMapS_parentSequenceF54D5
Flanking_sequencesaatattctgccttcaaaaatgttttcctttgaaaattttttaaggaaaaa
Mapping_targetF54D5
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004599From_analysisMillion_mutation_project_reanalysis
WBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00006629From_analysisMillion_mutation_project_reanalysis
WBStrain00006631From_analysisMillion_mutation_project_reanalysis
WBStrain00006640From_analysisMillion_mutation_project_reanalysis
WBStrain00022878From_analysisMillion_mutation_project_reanalysis
WBStrain00023138From_analysisMillion_mutation_project_reanalysis
WBStrain00027647From_analysisMillion_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01376886
WBVar00553149
StatusLive
AffectsGeneWBGene00010055
WBGene00010054
TranscriptF54D5.11.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF54D5.11.1:c.553-164A>T
Intron_number5/6
F54D5.12.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF54D5.12.2:c.-2-675A>T
Intron_number1/6
ReferenceWBPaper00038208
WBPaper00037807
Remark[20081124 db] this Variation was previously named hw29202
MethodWGS_Hawaiian_Waterston