WormBase Tree Display for Variation: WBVar00177973
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| WBVar00177973 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00177973 | |||
| Other_name | pas42163 | ||||
| haw31223 | |||||
| cewivar00015046 | |||||
| CE35655:p.Ala398= | |||||
| CE35654:p.Ala396= | |||||
| Y38E10A.6a.1:c.1188G>T | |||||
| Y38E10A.6b.1:c.1194G>T | |||||
| HGVSg | CHROMOSOME_II:g.12595206C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y38E10A | |
| Flanking_sequences | gaagctcatatccatgatgttcgtg | gcatatactgcagcgtcccgacgtt | |||
| Mapping_target | Y38E10A | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (34) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar01314712 | |||
| WBVar00230387 | |||||
| WBVar01379758 | |||||
| WBVar01248125 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012584 | |||
| Transcript | Y38E10A.6b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y38E10A.6b.1:c.1194G>T | ||||
| HGVSp | CE35655:p.Ala398= | ||||
| cDNA_position | 1194 | ||||
| CDS_position | 1194 | ||||
| Protein_position | 398 | ||||
| Exon_number | 7/19 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Y38E10A.6a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y38E10A.6a.1:c.1188G>T | ||||
| HGVSp | CE35654:p.Ala396= | ||||
| cDNA_position | 1188 | ||||
| CDS_position | 1188 | ||||
| Protein_position | 396 | ||||
| Exon_number | 7/19 | ||||
| Codon_change | gcG/gcT | ||||
| Amino_acid_change | A | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw31223 | ||||
| Method | WGS_Hawaiian_Waterston |
