WormBase Tree Display for Variation: WBVar00177977
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| WBVar00177977 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00177977 | |||
| Other_name | pas42164 | ||||
| haw31227 | |||||
| cewivar00015052 | |||||
| CE35654:p.Lys368= | |||||
| Y38E10A.6a.1:c.1104A>G | |||||
| Y38E10A.6b.1:c.1110A>G | |||||
| CE35655:p.Lys370= | |||||
| HGVSg | CHROMOSOME_II:g.12596172T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y38E10A | |
| Flanking_sequences | tattcgtcctttcggcgattttttc | ttgattttctgattcacaaattgat | |||
| Mapping_target | Y38E10A | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (33) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar01248137 | |||
| WBVar01314714 | |||||
| WBVar00230388 | |||||
| WBVar01379762 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012584 | |||
| Transcript | Y38E10A.6b.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y38E10A.6b.1:c.1110A>G | ||||
| HGVSp | CE35655:p.Lys370= | ||||
| cDNA_position | 1110 | ||||
| CDS_position | 1110 | ||||
| Protein_position | 370 | ||||
| Exon_number | 6/19 | ||||
| Codon_change | aaA/aaG | ||||
| Amino_acid_change | K | ||||
| Y38E10A.6a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y38E10A.6a.1:c.1104A>G | ||||
| HGVSp | CE35654:p.Lys368= | ||||
| cDNA_position | 1104 | ||||
| CDS_position | 1104 | ||||
| Protein_position | 368 | ||||
| Exon_number | 6/19 | ||||
| Codon_change | aaA/aaG | ||||
| Amino_acid_change | K | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw31227 | ||||
| Method | WGS_Hawaiian_Waterston |
