WormBase Tree Display for Variation: WBVar00178767
expand all nodes | collapse all nodes | view schema
| WBVar00178767 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00178767 | |||
| Other_name | haw46043 | ||||
| cewivar00023787 | |||||
| T21C12.1b.1:c.480-538C>T | |||||
| T21C12.1c.1:c.480-538C>T | |||||
| T21C12.1j.1:c.480-538C>T | |||||
| T21C12.1k.1:c.480-538C>T | |||||
| T21C12.1e.1:c.480-538C>T | |||||
| T21C12.1c.2:c.480-538C>T | |||||
| T21C12.1d.1:c.480-538C>T | |||||
| T21C12.1f.1:c.480-538C>T | |||||
| HGVSg | CHROMOSOME_III:g.10523705C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T21C12 | |
| Flanking_sequences | aaaaaccgcattttccaacatggtg | atcgaagaaaaaaagttggtttttg | |||
| Mapping_target | T21C12 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (84) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01448127 | |||
| WBVar01448126 | |||||
| WBVar01267966 | |||||
| WBVar01333003 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006784 | |||
| Transcript | T21C12.1k.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1k.1:c.480-538C>T | ||||
| Intron_number | 4/11 | ||||
| T21C12.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.1:c.480-538C>T | ||||
| Intron_number | 5/18 | ||||
| T21C12.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1e.1:c.480-538C>T | ||||
| Intron_number | 5/19 | ||||
| T21C12.1c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.2:c.480-538C>T | ||||
| Intron_number | 5/14 | ||||
| T21C12.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1b.1:c.480-538C>T | ||||
| Intron_number | 5/14 | ||||
| T21C12.1j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1j.1:c.480-538C>T | ||||
| Intron_number | 4/5 | ||||
| T21C12.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1d.1:c.480-538C>T | ||||
| Intron_number | 5/17 | ||||
| T21C12.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1f.1:c.480-538C>T | ||||
| Intron_number | 5/11 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw46043 | ||||
| Method | WGS_Hawaiian_Waterston |
