WormBase Tree Display for Variation: WBVar00178771
expand all nodes | collapse all nodes | view schema
| WBVar00178771 | Name | Public_name | WBVar00178771 | ||
|---|---|---|---|---|---|
| Other_name (13) | |||||
| HGVSg | CHROMOSOME_III:g.10526283T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T21C12 | |
| Flanking_sequences | acgcacatgtcactacatacactga | gacacagatcccaataaaacttaac | |||
| Mapping_target | T21C12 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (16) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00565170 | |||
| WBVar01333008 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006784 | |||
| Transcript | T21C12.1l.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1l.1:c.439+342T>C | ||||
| Intron_number | 4/8 | ||||
| T21C12.1k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1k.1:c.563-1687T>C | ||||
| Intron_number | 5/11 | ||||
| T21C12.1m.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1m.1:c.59-1687T>C | ||||
| Intron_number | 1/8 | ||||
| T21C12.1c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.1:c.563-1687T>C | ||||
| Intron_number | 6/18 | ||||
| T21C12.1e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1e.1:c.563-1687T>C | ||||
| Intron_number | 6/19 | ||||
| T21C12.1c.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1c.2:c.563-1687T>C | ||||
| Intron_number | 6/14 | ||||
| T21C12.1b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1b.1:c.943+342T>C | ||||
| Intron_number | 9/14 | ||||
| T21C12.1o.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1o.1:c.58+1958T>C | ||||
| Intron_number | 1/5 | ||||
| T21C12.1d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1d.1:c.563-1687T>C | ||||
| Intron_number | 6/17 | ||||
| T21C12.1f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T21C12.1f.1:c.562+1958T>C | ||||
| Intron_number | 6/11 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw46047 | ||||
| Method | WGS_Hawaiian_Waterston |
