WormBase Tree Display for Variation: WBVar00178987
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| WBVar00178987 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00178987 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.10676619A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y39A1A | |
| Flanking_sequences | cgacttttcccagatgccagaggtt | gtaacgccgaagtttttagaagaaa | |||
| Mapping_target | Y39A1A | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (15) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01268253 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000566 | |||
| Transcript | Y39A1A.15e.3 | VEP_consequence | splice_region_variant,intron_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15e.3:c.2466+4A>T | ||||
| Intron_number | 9/10 | ||||
| Y39A1A.15b.2 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15b.2:c.2700+4A>T | ||||
| Intron_number | 11/12 | ||||
| Y39A1A.15b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15b.1:c.2700+4A>T | ||||
| Intron_number | 12/13 | ||||
| Y39A1A.15g.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15g.1:c.1845+4A>T | ||||
| Intron_number | 5/6 | ||||
| Y39A1A.15f.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15f.1:c.2073+4A>T | ||||
| Intron_number | 8/9 | ||||
| Y39A1A.15a.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15a.1:c.3168+4A>T | ||||
| Intron_number | 10/11 | ||||
| Y39A1A.15e.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15e.1:c.2466+4A>T | ||||
| Intron_number | 11/12 | ||||
| Y39A1A.15c.1 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15c.1:c.2556+4A>T | ||||
| Intron_number | 9/10 | ||||
| Y39A1A.15e.2 | VEP_consequence | splice_region_variant,intron_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y39A1A.15e.2:c.2466+4A>T | ||||
| Intron_number | 10/11 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw46263 | ||||
| Method | WGS_Hawaiian_Waterston |
