WormBase Tree Display for Variation: WBVar00179568
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| WBVar00179568 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00179568 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_III:g.11258696T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47D3A | |
| Flanking_sequences | ttattgtttttaatttgattttttt | aaattttggattaggcagtcttaag | |||
| Mapping_target | Y47D3A | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00565705 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00012930 | |||
| Transcript | Y47D3A.17b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.1:c.1348-128A>T | ||||
| Intron_number | 12/16 | ||||
| Y47D3A.17b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.2:c.1348-128A>T | ||||
| Intron_number | 12/16 | ||||
| Y47D3A.17c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17c.1:c.1993-128A>T | ||||
| Intron_number | 11/14 | ||||
| Y47D3A.17b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.3:c.1348-128A>T | ||||
| Intron_number | 11/15 | ||||
| Y47D3A.17a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17a.1:c.1765-128A>T | ||||
| Intron_number | 13/17 | ||||
| Y47D3A.17d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17d.1:c.814-128A>T | ||||
| Intron_number | 4/8 | ||||
| Y47D3A.17e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17e.1:c.1663-128A>T | ||||
| Intron_number | 12/15 | ||||
| Y47D3A.17b.4 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y47D3A.17b.4:c.1348-128A>T | ||||
| Intron_number | 10/13 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw46844 | ||||
| Method | WGS_Hawaiian_Waterston |
