WormBase Tree Display for Variation: WBVar00180852
expand all nodes | collapse all nodes | view schema
WBVar00180852 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00180852 | |||
Other_name | haw48128 | ||||
haw146753 | |||||
cewivar00198871 | |||||
Y56A3A.31a.1:c.982+590A>T | |||||
Y56A3A.31a.2:c.982+590A>T | |||||
Y56A3A.31b.1:c.1015+590A>T | |||||
Y56A3A.31c.1:c.763+590A>T | |||||
HGVSg | CHROMOSOME_III:g.11988430A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y56A3A | |
Flanking_sequences | acaaaatatctcgatgcgaaaagaa | actacagtaaccttttaaatgacta | |||
Mapping_target | Y56A3A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00566618 | |||
Status | Live | ||||
Affects | Gene | WBGene00013243 | |||
Transcript | Y56A3A.31c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.31c.1:c.763+590A>T | ||||
Intron_number | 3/3 | ||||
Y56A3A.31b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.31b.1:c.1015+590A>T | ||||
Intron_number | 6/6 | ||||
Y56A3A.31a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.31a.2:c.982+590A>T | ||||
Intron_number | 5/6 | ||||
Y56A3A.31a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.31a.1:c.982+590A>T | ||||
Intron_number | 6/7 | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw48128 | ||||
Method | WGS_Hawaiian_Waterston |