WormBase Tree Display for Variation: WBVar00180869
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| WBVar00180869 | Name | Public_name | WBVar00180869 | ||
|---|---|---|---|---|---|
| Other_name | haw48145 | ||||
| haw146768 | |||||
| cewivar00152796 | |||||
| Y56A3A.32a.1:c.1656G>A | |||||
| CE31841:p.Glu552= | |||||
| Y56A3A.32c.1:c.1002G>A | |||||
| CE47879:p.Glu334= | |||||
| HGVSg | CHROMOSOME_III:g.11997250G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y56A3A | |
| Flanking_sequences | cggctggtgcgattgcaacgtttga | gatggggttctcggtgcgagacgag | |||
| Mapping_target | Y56A3A | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01336516 | |||
| WBVar00566633 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00006937 | |||
| Transcript | Y56A3A.32c.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y56A3A.32c.1:c.1002G>A | ||||
| HGVSp | CE47879:p.Glu334= | ||||
| cDNA_position | 1002 | ||||
| CDS_position | 1002 | ||||
| Protein_position | 334 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | gaG/gaA | ||||
| Amino_acid_change | E | ||||
| Y56A3A.32a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y56A3A.32a.1:c.1656G>A | ||||
| HGVSp | CE31841:p.Glu552= | ||||
| cDNA_position | 1689 | ||||
| CDS_position | 1656 | ||||
| Protein_position | 552 | ||||
| Exon_number | 7/10 | ||||
| Codon_change | gaG/gaA | ||||
| Amino_acid_change | E | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw48145 | ||||
| Method | WGS_Hawaiian_Waterston |
