WormBase Tree Display for Variation: WBVar00180914
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WBVar00180914 | Evidence | Paper_evidence | WBPaper00038208 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00180914 | |||
Other_name | haw48190 | ||||
haw146807 | |||||
cewivar00026903 | |||||
Y79H2A.3a.1:c.5253+341A>G | |||||
Y79H2A.3e.1:c.5217+341A>G | |||||
Y79H2A.3g.1:c.3327+341A>G | |||||
Y79H2A.3d.1:c.5232+341A>G | |||||
HGVSg | CHROMOSOME_III:g.12033824T>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y79H2A | |
Flanking_sequences | attgtgacattctataaaaaattga | ttttttttgtttttccgctgtttct | |||
Mapping_target | Y79H2A | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | |||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00566672 | |||
Status | Live | ||||
Affects | Gene | WBGene00013580 | |||
Transcript | Y79H2A.3e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3e.1:c.5217+341A>G | ||||
Intron_number | 25/28 | ||||
Y79H2A.3g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3g.1:c.3327+341A>G | ||||
Intron_number | 14/16 | ||||
Y79H2A.3d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3d.1:c.5232+341A>G | ||||
Intron_number | 26/29 | ||||
Y79H2A.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y79H2A.3a.1:c.5253+341A>G | ||||
Intron_number | 26/29 | ||||
Reference | WBPaper00038208 | ||||
Remark | [20081124 db] this Variation was previously named hw48190 | ||||
Method | WGS_Hawaiian_Waterston |