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WormBase Tree Display for Variation: WBVar00183145

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Name Class

WBVar00183145EvidencePaper_evidenceWBPaper00038208
NamePublic_nameWBVar00183145
Other_namehaw50421
haw148418
cewivar00200442
Y55F3AL.1f.1:c.541-219T>G
Y55F3AL.1d.1:c.2287-219T>G
Y55F3AL.1a.1:c.2854-219T>G
Y55F3AL.1b.1:c.2854-219T>G
Y55F3AL.1e.1:c.541-219T>G
Y55F3AL.1c.1:c.2287-219T>G
HGVSgCHROMOSOME_IV:g.973545T>G
Sequence_detailsSMapS_parentSequenceY55F3AL
Flanking_sequencestgataatttcgcggtaaatcgatgctttacaaagaaatcgataacttcca
Mapping_targetY55F3AL
Type_of_mutationSubstitutionTG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00568283
StatusLive
AffectsGeneWBGene00004047
TranscriptY55F3AL.1e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1e.1:c.541-219T>G
Intron_number1/11
Y55F3AL.1d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1d.1:c.2287-219T>G
Intron_number10/20
Y55F3AL.1f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1f.1:c.541-219T>G
Intron_number1/11
Y55F3AL.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1b.1:c.2854-219T>G
Intron_number13/24
Y55F3AL.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1a.1:c.2854-219T>G
Intron_number13/24
Y55F3AL.1c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AL.1c.1:c.2287-219T>G
Intron_number10/20
ReferenceWBPaper00038208
Remark[20081124 db] this Variation was previously named hw50421
MethodWGS_Hawaiian_Waterston