WormBase Tree Display for Variation: WBVar00183250
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WBVar00183250 | Name | Public_name | WBVar00183250 | ||
---|---|---|---|---|---|
Other_name | haw50526 | ||||
Y55F3AM.3c.3:c.-127-93T>A | |||||
Y55F3AM.3c.4:c.-127-93T>A | |||||
Y55F3AM.3c.1:c.-127-93T>A | |||||
Y55F3AM.3a.1:c.309-93T>A | |||||
Y55F3AM.3c.2:c.-220T>A | |||||
HGVSg | CHROMOSOME_IV:g.1014144T>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y55F3AM | |
Flanking_sequences | ttactcaatttttcgggaaatatcc | tttttttttcattaaaaaatggggt | |||
Mapping_target | Y55F3AM | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
Status | Live | ||||
Affects | Gene | WBGene00021921 | |||
Transcript | Y55F3AM.3c.2 | VEP_consequence | 5_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AM.3c.2:c.-220T>A | ||||
cDNA_position | 1397 | ||||
Exon_number | 2/7 | ||||
Y55F3AM.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AM.3c.1:c.-127-93T>A | ||||
Intron_number | 4/9 | ||||
Y55F3AM.3c.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AM.3c.4:c.-127-93T>A | ||||
Intron_number | 2/7 | ||||
Y55F3AM.3c.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AM.3c.3:c.-127-93T>A | ||||
Intron_number | 2/7 | ||||
Y55F3AM.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3AM.3a.1:c.309-93T>A | ||||
Intron_number | 4/8 | ||||
Remark | [20081124 db] this Variation was previously named hw50526 | ||||
Method | WGS_Hawaiian_Waterston |