WormBase Tree Display for Variation: WBVar00195250
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WBVar00195250 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00195250 | |||
Other_name | haw62526 | ||||
cewivar00212705 | |||||
Y57G11A.1f.1:c.788-6T>A | |||||
Y57G11A.1e.1:c.812-6T>A | |||||
Y57G11A.1d.1:c.788-6T>A | |||||
Y57G11A.1b.1:c.788-6T>A | |||||
HGVSg | CHROMOSOME_IV:g.14500526A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y57G11A | |
Flanking_sequences | agaggcagcgtgctcgtcttctgga | atattcattgttaaagcggatagca | |||
Mapping_target | Y57G11A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
Laboratory | RW | ||||
QX | |||||
Person | WBPerson1562 | ||||
WBPerson1730 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01455491 | |||
Status | Live | ||||
Affects | Gene | WBGene00013289 | |||
Transcript | Y57G11A.1f.1 | VEP_consequence | splice_region_variant,intron_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y57G11A.1f.1:c.788-6T>A | ||||
Intron_number | 5/13 | ||||
Y57G11A.1e.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y57G11A.1e.1:c.812-6T>A | ||||
Intron_number | 6/14 | ||||
Y57G11A.1d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y57G11A.1d.1:c.788-6T>A | ||||
Intron_number | 5/13 | ||||
Y57G11A.1b.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y57G11A.1b.1:c.788-6T>A | ||||
Intron_number | 6/14 | ||||
Reference | WBPaper00040707 | ||||
Remark | [20081124 db] this Variation was previously named hw62526 | ||||
Method | WGS_Hawaiian_Waterston |