WormBase Tree Display for Variation: WBVar00198256
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| WBVar00198256 | Name | Public_name | WBVar00198256 | ||
|---|---|---|---|---|---|
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_IV:g.16004711T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y105C5B | |
| Flanking_sequences | ttaaacgtttgtttcaatttggaat | taaaagatacaaatagctgaagaac | |||
| Mapping_target | Y105C5B | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00578011 | |||
| WBVar00271112 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002175 | |||
| Transcript | Y105C5B.21g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21g.1:c.754-149A>T | ||||
| Intron_number | 4/10 | ||||
| Y105C5B.21e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21e.1:c.1264-149A>T | ||||
| Intron_number | 7/14 | ||||
| Y105C5B.21f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21f.1:c.1045-149A>T | ||||
| Intron_number | 5/11 | ||||
| Y105C5B.21c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21c.1:c.1045-149A>T | ||||
| Intron_number | 5/11 | ||||
| Y105C5B.21h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21h.1:c.535-149A>T | ||||
| Intron_number | 4/11 | ||||
| Y105C5B.21b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21b.1:c.754-149A>T | ||||
| Intron_number | 4/10 | ||||
| Y105C5B.21d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21d.1:c.535-149A>T | ||||
| Intron_number | 4/11 | ||||
| Y105C5B.21a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y105C5B.21a.1:c.1264-149A>T | ||||
| Intron_number | 7/14 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw65532 | ||||
| Method | WGS_Hawaiian_Waterston |
