WormBase Tree Display for Variation: WBVar00199596
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| WBVar00199596 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00199596 | |||
| Other_name | haw66872 | ||||
| haw158942 | |||||
| cewivar00218001 | |||||
| Y43D4A.5d.1:c.275+269C>T | |||||
| CE50592:p.Leu158Phe | |||||
| CE50667:p.Leu158Phe | |||||
| Y43D4A.5b.1:c.275+269C>T | |||||
| Y43D4A.5a.1:c.472C>T | |||||
| Y43D4A.5c.1:c.472C>T | |||||
| HGVSg | CHROMOSOME_IV:g.16776720C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43D4A | |
| Flanking_sequences | cacaaaaagccacgtggcaagcgag | ttgacgagattcaggccgctattca | |||
| Mapping_target | Y43D4A | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00578807 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00012791 | |||
| Transcript | Y43D4A.5d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43D4A.5d.1:c.275+269C>T | ||||
| Intron_number | 4/15 | ||||
| Y43D4A.5a.1 (12) | |||||
| Y43D4A.5c.1 (12) | |||||
| Y43D4A.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43D4A.5b.1:c.275+269C>T | ||||
| Intron_number | 3/14 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw66872 | ||||
| Method | WGS_Hawaiian_Waterston |
