WormBase Tree Display for Variation: WBVar00199597
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| WBVar00199597 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00199597 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_IV:g.16779864C>A | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43D4A | |
| Flanking_sequences | agattatcttgtcactttccgagtc | agagcgatgctctttgacttgctca | |||
| Mapping_target | Y43D4A | ||||
| Type_of_mutation | Substitution | C | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (13) | |||||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00578811 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00012791 | |||
| Transcript | Y43D4A.5d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | Y43D4A.5d.1:c.627C>A | ||||
| HGVSp | CE50551:p.Ser209= | ||||
| cDNA_position | 719 | ||||
| CDS_position | 627 | ||||
| Protein_position | 209 | ||||
| Exon_number | 8/16 | ||||
| Codon_change | tcC/tcA | ||||
| Amino_acid_change | S | ||||
| Y43D4A.5a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y43D4A.5a.1:c.3393C>A | ||||
| HGVSp | CE50592:p.Ser1131= | ||||
| cDNA_position | 3413 | ||||
| CDS_position | 3393 | ||||
| Protein_position | 1131 | ||||
| Exon_number | 9/18 | ||||
| Codon_change | tcC/tcA | ||||
| Amino_acid_change | S | ||||
| Y43D4A.5c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y43D4A.5c.1:c.3393C>A | ||||
| HGVSp | CE50667:p.Ser1131= | ||||
| cDNA_position | 3393 | ||||
| CDS_position | 3393 | ||||
| Protein_position | 1131 | ||||
| Exon_number | 8/16 | ||||
| Codon_change | tcC/tcA | ||||
| Amino_acid_change | S | ||||
| Y43D4A.5b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y43D4A.5b.1:c.627C>A | ||||
| HGVSp | CE50629:p.Ser209= | ||||
| cDNA_position | 627 | ||||
| CDS_position | 627 | ||||
| Protein_position | 209 | ||||
| Exon_number | 7/15 | ||||
| Codon_change | tcC/tcA | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw66873 | ||||
| Method | WGS_Hawaiian_Waterston |
