WormBase Tree Display for Variation: WBVar00206939
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| WBVar00206939 | Name | Public_name | WBVar00206939 | ||
|---|---|---|---|---|---|
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_V:g.3770488C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | R08E5 | |
| Flanking_sequences | taaggaccaaatcgaaggaatccgt | caaatttctggcatttttccagcgt | |||
| Mapping_target | R08E5 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006622 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| SNP_Swan | |||||
| History | Acquires_merge | WBVar00584240 | |||
| WBVar00271746 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019961 | |||
| Transcript | R08E5.1a.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | R08E5.1a.1:c.741G>A | ||||
| HGVSp | CE50266:p.Trp247Ter | ||||
| cDNA_position | 762 | ||||
| CDS_position | 741 | ||||
| Protein_position | 247 | ||||
| Exon_number | 5/7 | ||||
| Codon_change | tgG/tgA | ||||
| Amino_acid_change | W/* | ||||
| R08E5.1b.1 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | R08E5.1b.1:c.540G>A | ||||
| HGVSp | CE42393:p.Trp180Ter | ||||
| cDNA_position | 762 | ||||
| CDS_position | 540 | ||||
| Protein_position | 180 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | tgG/tgA | ||||
| Amino_acid_change | W/* | ||||
| R08E5.1b.3 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | R08E5.1b.3:c.540G>A | ||||
| HGVSp | CE42393:p.Trp180Ter | ||||
| cDNA_position | 798 | ||||
| CDS_position | 540 | ||||
| Protein_position | 180 | ||||
| Exon_number | 4/5 | ||||
| Codon_change | tgG/tgA | ||||
| Amino_acid_change | W/* | ||||
| R08E5.1b.2 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | R08E5.1b.2:c.540G>A | ||||
| HGVSp | CE42393:p.Trp180Ter | ||||
| cDNA_position | 970 | ||||
| CDS_position | 540 | ||||
| Protein_position | 180 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | tgG/tgA | ||||
| Amino_acid_change | W/* | ||||
| R08E5.1b.4 | VEP_consequence | stop_gained | |||
| VEP_impact | HIGH | ||||
| HGVSc | R08E5.1b.4:c.540G>A | ||||
| HGVSp | CE42393:p.Trp180Ter | ||||
| cDNA_position | 728 | ||||
| CDS_position | 540 | ||||
| Protein_position | 180 | ||||
| Exon_number | 4/6 | ||||
| Codon_change | tgG/tgA | ||||
| Amino_acid_change | W/* | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00005369 | |||||
| Remark | [20081124 db] this Variation was previously named hw74215 | ||||
| Method | WGS_Hawaiian_Waterston |
