WormBase Tree Display for Variation: WBVar00209195
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| WBVar00209195 | Evidence | Paper_evidence | WBPaper00038208 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00209195 | |||
| Other_name | haw76471 | ||||
| haw166042 | |||||
| cewivar00233469 | |||||
| C10G8.5a.1:c.2838+14A>T | |||||
| C10G8.5d.1:c.2852A>T | |||||
| CE32582:p.Ter406LeuextTer? | |||||
| C10G8.5b.1:c.2688+14A>T | |||||
| CE32583:p.Ter951LeuextTer? | |||||
| C10G8.5c.1:c.1217A>T | |||||
| HGVSg | CHROMOSOME_V:g.5309668A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C10G8 | |
| Flanking_sequences | attgcattgagggtaagattttttt | aaacttagacctgtaacatagattt | |||
| Mapping_target | C10G8 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00585907 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00003567 | |||
| Transcript | C10G8.5d.1 | VEP_consequence | stop_lost | ||
| VEP_impact | HIGH | ||||
| HGVSc | C10G8.5d.1:c.2852A>T | ||||
| HGVSp | CE32583:p.Ter951LeuextTer? | ||||
| cDNA_position | 2852 | ||||
| CDS_position | 2852 | ||||
| Protein_position | 951 | ||||
| Exon_number | 13/13 | ||||
| Codon_change | tAa/tTa | ||||
| Amino_acid_change | */L | ||||
| C10G8.5c.1 | VEP_consequence | stop_lost | |||
| VEP_impact | HIGH | ||||
| HGVSc | C10G8.5c.1:c.1217A>T | ||||
| HGVSp | CE32582:p.Ter406LeuextTer? | ||||
| cDNA_position | 1260 | ||||
| CDS_position | 1217 | ||||
| Protein_position | 406 | ||||
| Exon_number | 7/7 | ||||
| Codon_change | tAa/tTa | ||||
| Amino_acid_change | */L | ||||
| C10G8.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C10G8.5b.1:c.2688+14A>T | ||||
| Intron_number | 13/14 | ||||
| C10G8.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C10G8.5a.1:c.2838+14A>T | ||||
| Intron_number | 14/15 | ||||
| Reference | WBPaper00038208 | ||||
| Remark | [20081124 db] this Variation was previously named hw76471 | ||||
| Method | WGS_Hawaiian_Waterston |
