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WormBase Tree Display for Variation: WBVar00209837

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Name Class

WBVar00209837NamePublic_nameWBVar00209837
Other_namesnp_F26F12[3]
haw77113
haw166473
cewivar00234275
F26F12.3b.3:c.119-490C>T
F26F12.3c.1:c.-843C>T
F26F12.3b.2:c.119-490C>T
F26F12.3b.1:c.119-490C>T
F26F12.3a.1:c.374-490C>T
HGVSgCHROMOSOME_V:g.5843220G>A
Sequence_detailsSMapS_parentSequenceF26F12
Flanking_sequencestcaagtgttagattattgtaagtttttttgacaaaattcaaactgaccat
Mapping_targetF26F12
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
WBPerson4037
AnalysisWGS_Hawaiian_Waterston
WGS_Yanai
Million_mutation_project_reanalysis
SNP_Wicks
HistoryAcquires_mergeWBVar00586338
WBVar00244417
StatusLive
AffectsGeneWBGene00017834
TranscriptF26F12.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3b.1:c.119-490C>T
Intron_number3/6
F26F12.3b.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3b.2:c.119-490C>T
Intron_number3/6
F26F12.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3a.1:c.374-490C>T
Intron_number3/6
F26F12.3c.1VEP_consequence5_prime_UTR_variant
VEP_impactMODIFIER
HGVScF26F12.3c.1:c.-843C>T
cDNA_position829
Exon_number3/7
F26F12.3b.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF26F12.3b.3:c.119-490C>T
Intron_number2/5
ReferenceWBPaper00038208
WBPaper00004703
Remark[20081124 db] this Variation was previously named hw77113
MethodWGS_Hawaiian_Waterston