WormBase Tree Display for Variation: WBVar00209837
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WBVar00209837 | Name | Public_name | WBVar00209837 | ||
---|---|---|---|---|---|
Other_name | snp_F26F12[3] | ||||
haw77113 | |||||
haw166473 | |||||
cewivar00234275 | |||||
F26F12.3b.3:c.119-490C>T | |||||
F26F12.3c.1:c.-843C>T | |||||
F26F12.3b.2:c.119-490C>T | |||||
F26F12.3b.1:c.119-490C>T | |||||
F26F12.3a.1:c.374-490C>T | |||||
HGVSg | CHROMOSOME_V:g.5843220G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F26F12 | |
Flanking_sequences | tcaagtgttagattattgtaagttt | ttttgacaaaattcaaactgaccat | |||
Mapping_target | F26F12 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar00586338 | |||
WBVar00244417 | |||||
Status | Live | ||||
Affects | Gene | WBGene00017834 | |||
Transcript | F26F12.3b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.1:c.119-490C>T | ||||
Intron_number | 3/6 | ||||
F26F12.3b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.2:c.119-490C>T | ||||
Intron_number | 3/6 | ||||
F26F12.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3a.1:c.374-490C>T | ||||
Intron_number | 3/6 | ||||
F26F12.3c.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3c.1:c.-843C>T | ||||
cDNA_position | 829 | ||||
Exon_number | 3/7 | ||||
F26F12.3b.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F26F12.3b.3:c.119-490C>T | ||||
Intron_number | 2/5 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | [20081124 db] this Variation was previously named hw77113 | ||||
Method | WGS_Hawaiian_Waterston |